org.simantics.interop/src/org/simantics/interop/test/GraphComparator.java

   1 /*******************************************************************************
   2  * Copyright (c) 2007, 2010 Association for Decentralized Information Management
   3  * in Industry THTH ry.
   4  * All rights reserved. This program and the accompanying materials
   5  * are made available under the terms of the Eclipse Public License v1.0
   6  * which accompanies this distribution, and is available at
   7  * http://www.eclipse.org/legal/epl-v10.html
   8  *
   9  * Contributors:
  10  *     Foster Wheeler Energia Oy - initial API and implementation
  11  *******************************************************************************/
  12 package org.simantics.interop.test;
  13
  14 import java.util.ArrayList;
  15 import java.util.Arrays;
  16 import java.util.Collection;
  17 import java.util.Collections;
  18 import java.util.Comparator;
  19 import java.util.HashMap;
  20 import java.util.HashSet;
  21 import java.util.List;
  22 import java.util.Map;
  23 import java.util.Map.Entry;
  24 import java.util.Set;
  25 import java.util.Stack;
  26
  27 import org.simantics.databoard.Bindings;
  28 import org.simantics.db.ReadGraph;
  29 import org.simantics.db.Resource;
  30 import org.simantics.db.Session;
  31 import org.simantics.db.Statement;
  32 import org.simantics.db.common.request.ReadRequest;
  33 import org.simantics.db.common.utils.NameUtils;
  34 import org.simantics.db.exception.DatabaseException;
  35 import org.simantics.interop.test.GraphChanges.Modification;
  36 import org.simantics.layer0.Layer0;
  37 import org.simantics.utils.datastructures.BijectionMap;
  38 import org.simantics.utils.datastructures.MapList;
  39 import org.simantics.utils.datastructures.Pair;
  40
  41 /**
  42  * Compares two subgraphs and reports differences.
  43  *
  44  * Assumes that subgraphs (defined using traverse relations) are not cyclic.
  45  *
  46  * Assumes that properties can be used to identify objects, if relation type is not enough.
  47  *
  48  *
  49  *
  50  * @author Marko Luukkainen <marko.luukkainen@vtt.fi>
  51  *
  52  */
  53 public class GraphComparator {
  54
  55         private static final boolean DEBUG = true;
  56
  57         private Resource r1;
  58         private Resource r2;
  59         private Set<Resource> strong = new HashSet<>();       // List of relations that identify object, if subject is already identified.
  60         private List<Resource> traversed = new ArrayList<>(); // list of relations that are traversed (and tested)
  61         private List<Resource> tested = new ArrayList<>();    // list of relations that are tested, but not traversed
  62         private List<Resource> nonTraversed = new ArrayList<>(); // list of relations that are not traversed
  63         private List<Resource> nonTested = new ArrayList<>(); // list of relations that are not tested
  64
  65         private List<Statement> changes1 = new ArrayList<>();
  66         private List<Statement> changes2 = new ArrayList<>();
  67         private List<Modification> modifications = new ArrayList<>();
  68         private Set<Statement> changes1Set = new HashSet<>();
  69         private Set<Statement> changes2Set = new HashSet<>();
  70         private Set<Modification> modificationsSet = new HashSet<>();
  71
  72         private BijectionMap<Statement, Statement> comparableStatements = new BijectionMap<>();
  73         private BijectionMap<Resource, Resource> comparableResources = new BijectionMap<>();
  74
  75         private Set<Resource> processedResources = new HashSet<Resource>();
  76
  77         private ResourceComparator comparator;
  78
  79         private Comparator<Statement> scomp = new PredicateComparator();
  80         private Comparator<Resource> rcomp = new ResComparator();
  81
  82         private Set<Resource> nonMatchedLeft = new HashSet<Resource>();
  83         private Set<Resource> nonMatchedRight = new HashSet<Resource>();
  84
  85         // runtime attributes
  86
  87         private ReadGraph g;
  88         private Layer0 b;
  89
  90         public GraphComparator(Resource r1, Resource r2) {
  91                 this.r1 = r1;
  92                 this.r2 = r2;
  93                 comparator = new TypeComparator();
  94         }
  95
  96         public GraphComparator(Resource r1, Resource r2, ResourceComparator comparator) {
  97                 this.r1 = r1;
  98                 this.r2 = r2;
  99                 this.comparator = comparator;
 100         }
 101
 102         ArrayList<Statement> ss1 = new ArrayList<Statement>();
 103         ArrayList<Statement> ss2 = new ArrayList<Statement>();
 104
 105
 106         public Comparator<Resource> getResourceComparator() {
 107                 return rcomp;
 108         }
 109
 110         public Comparator<Statement> getStatementComparator() {
 111                 return scomp;
 112         }
 113
 114         public Resource getR1() {
 115                 return r1;
 116         }
 117
 118         public Resource getR2() {
 119                 return r2;
 120         }
 121
 122         public void addTraversed(Resource rel) {
 123                 traversed.add(rel);
 124         }
 125
 126         public void addTraversed(Collection<Resource> rels) {
 127                 traversed.addAll(rels);
 128         }
 129
 130         public void addNonTraversed(Resource rel) {
 131                 nonTraversed.add(rel);
 132         }
 133
 134         public void addNonTraversed(Collection<Resource> rels) {
 135                 nonTraversed.addAll(rels);
 136         }
 137
 138         public void addTested(Resource rel) {
 139                 tested.add(rel);
 140         }
 141
 142         public void addTested(Collection<Resource> rels) {
 143                 tested.addAll(rels);
 144         }
 145
 146         public void addNonTested(Resource rel) {
 147                 nonTested.add(rel);
 148         }
 149
 150         public void addNonTested(Collection<Resource> rels) {
 151                 nonTested.addAll(rels);
 152         }
 153
 154         public void addComparableResources(Resource r1, Resource r2) {
 155                 if (DEBUG)
 156                         System.out.println("Preset " + r1 + " = " + r2);
 157                 comparableResources.map(r1, r2);
 158         }
 159
 160         public void addComparableResources(BijectionMap<Resource, Resource> matching) {
 161                 if (DEBUG) {
 162                         for (Entry<Resource, Resource> entry : matching.getEntries())
 163                                 System.out.println("Preset " + entry.getKey() + " = " + entry.getValue());
 164                 }
 165                 comparableResources.addAll(matching);
 166         }
 167
 168         public void addStrong(Resource r) {
 169                 strong.add(r);
 170         }
 171
 172         public void addStrong(Collection<Resource> rels) {
 173                 strong.addAll(rels);
 174         }
 175
 176         public void addNonMatchedLeft(Resource r) {
 177                 nonMatchedLeft.add(r);
 178         }
 179
 180         public void addNonMatchedRight(Resource r) {
 181                 nonMatchedRight.add(r);
 182         }
 183
 184         public void test(ReadGraph g) throws DatabaseException {
 185                 this.g = g;
 186                 this.b = Layer0.getInstance(g);
 187                 comparator.setComparator(this);
 188                 comparator.initialize(g, r1, r2);
 189
 190                 Stack<Resource> objectsLeft = new Stack<Resource>();
 191                 Stack<Resource> objectsRight = new Stack<Resource>();
 192                 objectsLeft.push(r1);
 193                 objectsRight.push(r2);
 194
 195                 Set<Statement> unreliableLeft = new HashSet<Statement>();
 196                 Set<Statement> unreliableRight = new HashSet<Statement>();
 197
 198                 while (true) {
 199                         if (objectsLeft.isEmpty())
 200                                 break;
 201
 202
 203                         // process compares objects that are identified and searches for more resources to process.
 204                         process(objectsLeft, objectsRight, unreliableLeft, unreliableRight);
 205                         // process unreliable handles cases where unidentified statements subject and object have been identified
 206                         processUnreliable(unreliableLeft, unreliableRight);
 207                         // process unreliable handles cases where unidentified resources have path of length one to identified resource
 208                         processUnreliable(unreliableLeft, unreliableRight,objectsLeft,objectsRight);
 209                         if (objectsLeft.isEmpty() && unreliableLeft.size() > 0 && unreliableRight.size() > 0) {
 210                                 processUnreliable2(unreliableLeft, unreliableRight,objectsLeft,objectsRight);
 211                         }
 212                         if (objectsLeft.isEmpty() && unreliableLeft.size() > 0 && unreliableRight.size() > 0) {
 213                                 // comparison is ending, but we have still unprocessed unidentified resources left.
 214                                 // These cases have longer path than one to identified objects.
 215                                 processUnreliableDeep(unreliableLeft, unreliableRight, objectsLeft, objectsRight);
 216                         }
 217
 218                 }
 219                 for (Statement s : unreliableLeft) {
 220                         if (!comparableStatements.containsLeft(s))
 221                                 addDeletion(s);
 222                 }
 223                 for (Statement s : unreliableRight) {
 224                         if (!comparableStatements.containsRight(s))
 225                                 addAddition(s);
 226                 }
 227         }
 228
 229         public void test(Session session) throws DatabaseException {
 230                 test(session, r1, r2);
 231         }
 232
 233         public void test(Session session, Resource r1, Resource r2) throws DatabaseException {
 234
 235                 comparator.setComparator(this);
 236
 237                 session.syncRequest(new ReadRequest() {
 238
 239             @Override
 240             public void run(ReadGraph graph) throws DatabaseException {
 241                 comparator.initialize(graph, r1, r2);
 242             }
 243         });
 244
 245                 addComparable(r1, r2);
 246
 247                 final Stack<Resource> objectsLeft = new Stack<Resource>();
 248                 final Stack<Resource> objectsRight = new Stack<Resource>();
 249                 objectsLeft.push(r1);
 250                 objectsRight.push(r2);
 251
 252                 final Set<Statement> unreliableLeft = new HashSet<Statement>();
 253                 final Set<Statement> unreliableRight = new HashSet<Statement>();
 254
 255                 while (true) {
 256                         if (objectsLeft.isEmpty())
 257                                 break;
 258                         session.syncRequest(new ReadRequest() {
 259
 260                                 @Override
 261                                 public void run(ReadGraph graph) throws DatabaseException {
 262                                         g = graph;
 263                                         b = Layer0.getInstance(graph);
 264                                         // process compares objects that are identified and searches for more resources to process.
 265                                         process(objectsLeft, objectsRight, unreliableLeft, unreliableRight);
 266                                         // process unreliable handles cases where unidentified statements subject and object have been identified
 267                                         processUnreliable(unreliableLeft, unreliableRight);
 268                                         // process unreliable handles cases where unidentified resources have path of length one to identified resource
 269                                         processUnreliable(unreliableLeft, unreliableRight,objectsLeft,objectsRight);
 270                                         if (objectsLeft.isEmpty() && unreliableLeft.size() > 0 && unreliableRight.size() > 0) {
 271                                                 processUnreliable2(unreliableLeft, unreliableRight,objectsLeft,objectsRight);
 272                                         }
 273                                         if (objectsLeft.isEmpty() && unreliableLeft.size() > 0 && unreliableRight.size() > 0) {
 274                                                 // comparison is ending, but we have still unprocessed unidentified resources left.
 275                                                 // These cases have longer path than one to identified objects.
 276                                                 processUnreliableDeep(unreliableLeft, unreliableRight, objectsLeft, objectsRight);
 277                                         }
 278                                         if (objectsLeft.isEmpty() && unreliableLeft.size() > 0 && unreliableRight.size() > 0) {
 279                                                 // comparison is ending, but we have still unprocessed unidentified resources left.
 280                                                 // These cases have longer path than one to identified objects.
 281                                                 processUnreliableDeep(unreliableLeft, unreliableRight, objectsLeft, objectsRight);
 282                                         }
 283                                 }
 284                         });
 285
 286
 287
 288                 }
 289                 for (Statement s : unreliableLeft) {
 290                         if (!comparableStatements.containsLeft(s))
 291                                 addDeletion(s);
 292                 }
 293                 for (Statement s : unreliableRight) {
 294                         if (!comparableStatements.containsRight(s))
 295                                 addAddition(s);
 296                 }
 297
 298
 299         }
 300
 301         private void process(Stack<Resource> objectsLeft, Stack<Resource> objectsRight, Set<Statement> unreliableLeft, Set<Statement> unreliableRight) throws DatabaseException {
 302                 List<Statement> ss1 = new ArrayList<Statement>();
 303                 List<Statement> ss2 = new ArrayList<Statement>();
 304
 305                 while (!objectsLeft.isEmpty()) {
 306                         Resource r1 = objectsLeft.pop();
 307                         Resource r2 = objectsRight.pop();
 308
 309                         if (r1.equals(r2))
 310                                 continue;
 311                         if (r1.getResourceId() == 610446L)
 312                                 System.out.println();
 313                         if (processedResources.contains(r1))
 314                                 continue;
 315                         processedResources.add(r1);
 316
 317
 318                         if((comparableResources.containsLeft(r1)||comparableResources.containsRight(r2)) && !comparableResources.contains(r1, r2)) {
 319                                 throw new DatabaseException("Comparator error: Trying to map " + r1 + " to " + r2 + " while mappings " + r1 + " to " + comparableResources.getRight(r1) + " and " + comparableResources.getLeft(r2) + " to " + r2 + " exist.");
 320                         }
 321                         addComparable(r1, r2);
 322
 323                         //System.out.println("test " + NameUtils.getSafeName(g, r1) + " " + NameUtils.getSafeName(g, r2));
 324                         compareProps(r1, r2);
 325
 326                         for (Resource rel : tested) {
 327                                 ss1.addAll(g.getStatements(r1, rel));
 328                                 ss2.addAll(g.getStatements(r2, rel));
 329                                 ss1 = filterAsserted(r1, ss1);
 330                                 ss2 = filterAsserted(r2, ss2);
 331                                 ss1 = filterTraversed(ss1);
 332                                 ss2 = filterTraversed(ss2);
 333                                 ss1 = filterNonTested(ss1);
 334                                 ss2 = filterNonTested(ss2);
 335
 336
 337                                 compareStatements(ss1, ss2, null, null,null,null);
 338                                 ss1.clear();
 339                                 ss2.clear();
 340                         }
 341
 342                         for (Resource rel : traversed) {
 343                                 ss1.addAll(g.getStatements(r1, rel));
 344                                 ss2.addAll(g.getStatements(r2, rel));
 345                                 ss1 = filterAsserted(r1, ss1);
 346                                 ss2 = filterAsserted(r2, ss2);
 347                                 ss1 = filterNonTraversed(ss1);
 348                                 ss2 = filterNonTraversed(ss2);
 349                                 compareStatements(ss1, ss2, objectsLeft, objectsRight,unreliableLeft,unreliableRight);
 350                                 ss1.clear();
 351                                 ss2.clear();
 352
 353                         }
 354                 }
 355         }
 356
 357         private void processUnreliable(Set<Statement> unreliableLeft, Set<Statement> unreliableRight) throws DatabaseException {
 358                 MapList<Resource,Statement> subjectLeft = new MapList<Resource, Statement>();
 359                 MapList<Resource,Statement> subjectRight = new MapList<Resource, Statement>();
 360                 MapList<Resource,Statement> objectLeft = new MapList<Resource, Statement>();
 361                 MapList<Resource,Statement> objectRight = new MapList<Resource, Statement>();
 362
 363                 for (Statement s : unreliableLeft) {
 364                         subjectLeft.add(s.getSubject(),s);
 365                         objectLeft.add(s.getObject(),s);
 366                 }
 367                 for (Statement s : unreliableRight) {
 368                         subjectRight.add(s.getSubject(),s);
 369                         objectRight.add(s.getObject(),s);
 370                 }
 371
 372                 for (Resource left : subjectLeft.getKeys()) {
 373                         Resource right = comparableResources.getRight(left);
 374                         if (right == null)
 375                                 continue;
 376                         for (Statement leftS : subjectLeft.getValues(left)) {
 377                                 Resource leftO = leftS.getObject();
 378                                 if (!unreliableLeft.contains(leftS))
 379                                         continue;
 380                                 Resource rightO = comparableResources.getRight(leftO);
 381                                 if (rightO == null)
 382                                         continue;
 383                                 for (Statement rightS : subjectRight.getValues(right)) {
 384                                         if (!rightS.getObject().equals(rightO))
 385                                                 continue;
 386                                         if (!unreliableRight.contains(rightS))
 387                                                 continue;
 388                                         if (leftS.getPredicate().equals(rightS.getPredicate()) ||
 389                                                 comparableResources.contains(leftS.getPredicate(), rightS.getPredicate())) {
 390                                                 unreliableLeft.remove(leftS);
 391                                                 unreliableRight.remove(rightS);
 392                                                 addComparable(leftS, rightS);
 393                                         }
 394                                 }
 395                         }
 396                 }
 397         }
 398
 399         private void processUnreliable(Set<Statement> unreliableLeft, Set<Statement> unreliableRight, Stack<Resource> objectsLeft, Stack<Resource> objectsRight) throws DatabaseException {
 400                 MapList<Resource,Statement> subjectLeft = new MapList<Resource, Statement>();
 401                 MapList<Resource,Statement> subjectRight = new MapList<Resource, Statement>();
 402                 MapList<Resource,Statement> objectLeft = new MapList<Resource, Statement>();
 403                 MapList<Resource,Statement> objectRight = new MapList<Resource, Statement>();
 404
 405                 for (Statement s : unreliableLeft) {
 406                         subjectLeft.add(s.getSubject(),s);
 407                         objectLeft.add(s.getObject(),s);
 408                 }
 409                 for (Statement s : unreliableRight) {
 410                         subjectRight.add(s.getSubject(),s);
 411                         objectRight.add(s.getObject(),s);
 412                 }
 413
 414                 for (Resource ol : objectLeft.getKeys()) {
 415                         // all statements to the left side object
 416                         List<Statement> left = objectLeft.getValues(ol);
 417                         // all subjects that have statements to the left side object (ol)
 418                         Set<Resource> sLeft = new HashSet<Resource>();
 419                         // all matching subjects on the right side
 420                         Set<Resource> sRight = new HashSet<Resource>();
 421                         for (Statement s : left) {
 422                                 sLeft.add(s.getSubject());
 423                                 sRight.add(comparableResources.getRight(s.getSubject()));
 424                         }
 425
 426                         // check if object left can be reliably identified by available statements
 427                         // if there are any objects on the left side with similar statements, object left cannot be mapped.
 428                         boolean hasSimilar = false;
 429                         MapList<Resource, Statement> comparableOLeft = new MapList<Resource, Statement>();
 430                         for (Resource sl : sLeft) {
 431                                 for (Statement s : subjectLeft.getValues(sl)) {
 432                                         if (!s.getObject().equals(ol)) {
 433                                                 comparableOLeft.add(s.getObject(),s);
 434                                         }
 435                                 }
 436                         }
 437
 438                         compareStatements(ss1, ss2, objectsLeft, objectsRight,unreliableLeft,unreliableRight);
 439
 440                         for (Resource similarOl : comparableOLeft.getKeys()) {
 441                                 List<Statement> similarLeft = comparableOLeft.getValues(similarOl);
 442                                 if (similarLeft.size() == left.size()) {
 443                                         boolean useL[] = new boolean[left.size()];
 444                                         boolean useSL[] = new boolean[left.size()];
 445                                         for (int i = 0; i < left.size(); i++) {
 446                                                 useL[i] = false;
 447                                                 useSL[i] = false;
 448                                         }
 449                                         for (int i = 0; i < left.size(); i++) {
 450                                                 for (int j = 0; j < left.size(); j++) {
 451                                                         if (useSL[j])
 452                                                                 continue;
 453                                                         // compare predicates
 454                                                         Resource pl = left.get(i).getPredicate();
 455                                                         Resource psl = similarLeft.get(j).getPredicate();
 456                                                         if (pl.equals(psl)) {
 457                                                                 // compare objects (unreliable result is interpreted as positive match)
 458
 459                                                                 int comp = comparator.compare(g, left.get(i).getObject(), similarLeft.get(j).getObject(), true);
 460                                                                 if (comp >= 0 && comp < Integer.MAX_VALUE) {
 461                                                                         useL[i] = true;
 462                                                                         useSL[j] = true;
 463                                                                         break;
 464                                                                 }
 465                                                         }
 466                                                 }
 467                                         }
 468                                         boolean diff = false;
 469                                         for (int i = 0; i < left.size(); i++) {
 470                                                 if (!useL[i] || !useSL[i]) {
 471                                                         diff = true;
 472                                                 }
 473                                         }
 474                                         if (!diff) {
 475                                                 hasSimilar = true;
 476                                                 break;
 477                                         }
 478                                 }
 479                         }
 480
 481                         if (hasSimilar)
 482                                 continue;
 483
 484
 485                         // all objects that subjects on the right side point to. Object left has its matching resource among these, if it has matching resource
 486                         MapList<Resource,Statement> possibleOR = new MapList<Resource, Statement>();
 487                         for (Resource sr : sRight) {
 488                                 for (Statement s : subjectRight.getValues(sr))
 489                                         possibleOR.add(s.getObject(),s);
 490                         }
 491
 492                         // filter possible right side objects to those that have same amount of statements as the left side object
 493                         for (Resource or : possibleOR.getKeys().toArray(new Resource[possibleOR.getKeys().size()])) {
 494                                 List<Statement> right = possibleOR.getValues(or);
 495                                 if (right.size() != left.size())
 496                                         possibleOR.remove(or);
 497
 498                         }
 499
 500                         // check for matching statements (comparable subjects, matching predicates)
 501                         MapList<Resource,Statement> matchingOR = new MapList<Resource, Statement>(); // list of objects that have matching statements
 502                         Map<Resource,Pair<int[], int[]>> matchingStatements = new HashMap<Resource, Pair<int[], int[]>>(); // matching statements
 503                         for (Resource or : possibleOR.getKeys()) {
 504                                 List<Statement> right = possibleOR.getValues(or);
 505                                 int iLeft[] = new int[left.size()];
 506                                 int iRight[] = new int[right.size()];
 507
 508                                 for (int i = 0; i < left.size(); i++) {
 509                                         iLeft[i] = -1;
 510                                         iRight[i] = -1;
 511                                 }
 512
 513                                 for (int l = 0; l < left.size(); l++) {
 514                                         Statement ls = left.get(l);
 515                                         for (int r = 0; r < right.size(); r++) {
 516                                                 if (iRight[r] >= 0)
 517                                                         continue;
 518                                                 Statement rs = right.get(r);
 519                                                 if (!comparableResources.contains(ls.getSubject(), rs.getSubject()))
 520                                                         continue;
 521                                                 if (rcomp.compare(ls.getPredicate(),rs.getPredicate()) == 0) {
 522                                                         // compare objects (unreliable result is not accepted)
 523                                                         int comp = comparator.compare(g, ls.getObject(), rs.getObject());
 524                                                         if (comp > 0 && comp < Integer.MAX_VALUE) {
 525                                                                 iLeft[l] = r;
 526                                                                 iRight[r] = l;
 527                                                                 break;
 528                                                         }
 529                                                         break;
 530                                                 }
 531                                         }
 532
 533                                 }
 534                                 boolean success = true;
 535                                 for (int i = 0; i < left.size(); i++) {
 536                                         if (iLeft[i] < 0) {
 537                                                 success = false;
 538                                                 break;
 539                                         }
 540                                         if (iRight[i] < 0) {
 541                                                 success = false;
 542                                                 break;
 543                                         }
 544
 545                                 }
 546                                 if (success) {
 547                                         for (Statement s : right)
 548                                                 matchingOR.add(or,s);
 549                                         matchingStatements.put(or, new Pair<int[], int[]>(iLeft, iRight));
 550                                 }
 551                         }
 552                         // if there is only one matching right side object, we have found a match
 553                         if (matchingOR.getKeySize() == 1) {
 554                                 Resource or = matchingOR.getKeys().iterator().next();
 555                                 List<Statement> right = matchingOR.getValues(or);
 556                                 Pair<int[], int[]> indices = matchingStatements.get(or);
 557
 558                                 objectsLeft.add(ol);
 559                                 objectsRight.add(or);
 560                                 addComparable(ol, or);
 561                                 for (int l = 0; l < left.size(); l++) {
 562                                         int r = indices.first[l];
 563                                         Statement sl = left.get(l);
 564                                         Statement sr = right.get(r);
 565                                         addComparable(sl, sr);
 566                                         unreliableLeft.remove(sl);
 567                                         unreliableRight.remove(sr);
 568                                 }
 569
 570                         } else {
 571
 572                         }
 573
 574                 }
 575
 576
 577         }
 578
 579         private void processUnreliable2(Set<Statement> unreliableLeft, Set<Statement> unreliableRight, Stack<Resource> objectsLeft, Stack<Resource> objectsRight) throws DatabaseException {
 580                 MapList<Resource,Statement> subjectLeft = new MapList<Resource, Statement>();
 581                 MapList<Resource,Statement> subjectRight = new MapList<Resource, Statement>();
 582                 MapList<Resource,Statement> objectLeft = new MapList<Resource, Statement>();
 583                 MapList<Resource,Statement> objectRight = new MapList<Resource, Statement>();
 584
 585                 for (Statement s : unreliableLeft) {
 586                         subjectLeft.add(s.getSubject(),s);
 587                         objectLeft.add(s.getObject(),s);
 588                 }
 589                 for (Statement s : unreliableRight) {
 590                         subjectRight.add(s.getSubject(),s);
 591                         objectRight.add(s.getObject(),s);
 592                 }
 593
 594                 for (Resource ol : objectLeft.getKeys()) {
 595                         // all statements to the left side object
 596                         List<Statement> left = objectLeft.getValues(ol);
 597                         // all subjects that have statements to the left side object (ol)
 598                         Set<Resource> sLeft = new HashSet<Resource>();
 599                         // all matching subjects on the right side
 600                         Set<Resource> sRight = new HashSet<Resource>();
 601                         for (Statement s : left) {
 602                                 sLeft.add(s.getSubject());
 603                                 sRight.add(comparableResources.getRight(s.getSubject()));
 604                         }
 605
 606                         if (sLeft.size() == 1 && sRight.size() == 1) {
 607                                 List<Statement> ss1 = new ArrayList<Statement>(subjectLeft.getValues(sLeft.iterator().next()));
 608                                 List<Statement> ss2 = new ArrayList<Statement>(subjectRight.getValues(sRight.iterator().next()));
 609
 610                                 int count = comparableStatements.size();
 611                                 compareStatements(ss1, ss2, objectsLeft, objectsRight,unreliableLeft,unreliableRight);
 612                                 if (comparableStatements.size() > count) {
 613                                         for (Entry<Statement, Statement> entry : comparableStatements.getEntries()) {
 614                                                 unreliableLeft.remove(entry.getKey());
 615                                                 unreliableRight.remove(entry.getValue());
 616                                         }
 617                                 }
 618                         }
 619                 }
 620         }
 621
 622         private void processUnreliableDeep(Set<Statement> unreliableLeft, Set<Statement> unreliableRight, Stack<Resource> objectsLeft, Stack<Resource> objectsRight) throws DatabaseException {
 623                 MapList<Resource,Statement> subjectLeft = new MapList<Resource, Statement>();
 624                 MapList<Resource,Statement> subjectRight = new MapList<Resource, Statement>();
 625                 MapList<Resource,Statement> objectLeft = new MapList<Resource, Statement>();
 626                 MapList<Resource,Statement> objectRight = new MapList<Resource, Statement>();
 627
 628                 for (Statement s : unreliableLeft) {
 629                         subjectLeft.add(s.getSubject(),s);
 630                         objectLeft.add(s.getObject(),s);
 631                 }
 632                 for (Statement s : unreliableRight) {
 633                         subjectRight.add(s.getSubject(),s);
 634                         objectRight.add(s.getObject(),s);
 635                 }
 636                 for (Resource ol : objectLeft.getKeys()) {
 637                         Set<Path> pathsLeft = new HashSet<Path>();
 638                         for (Resource rel : traversed) {
 639                                 pathsLeft.addAll(Path.create(g.getStatements(ol, rel)));
 640                         }
 641                         while (true) {
 642                                 expand(pathsLeft);
 643                                 if (pathsLeft.size() == 0)
 644                                         break;
 645                                 Collection<Path> endPaths = new ArrayList<Path>(1);
 646                                 for (Path p : pathsLeft) {
 647                                         if (comparableResources.containsLeft(p.getEnd())) {
 648                                                 endPaths.add(p);
 649                                         }
 650                                 }
 651                                 if (endPaths.size() > 0) {
 652                                         pathsLeft.clear();
 653                                         pathsLeft.addAll(endPaths);
 654                                         break;
 655                                 }
 656                         }
 657                         if (pathsLeft.size() > 0) {
 658                                 Resource sl = objectLeft.getValues(ol).get(0).getSubject();
 659                                 Resource sr = comparableResources.getRight(sl);
 660                                 Collection<Resource> possibleOR = new ArrayList<Resource>();
 661                                 for (Statement s : subjectRight.getValues(sr)) {
 662                                         possibleOR.add(s.getObject());
 663                                 }
 664                                 Map<Resource,Set<Path>> matchingPaths = new HashMap<Resource, Set<Path>>();
 665                                 for (Resource or : possibleOR) {
 666                                         Set<Path> possiblePathsRight = new HashSet<Path>();
 667                                         for (Path leftPath : pathsLeft) {
 668                                                 possiblePathsRight.addAll(findComparableRight(leftPath, or));
 669                                         }
 670                                         if (hasMatchingPaths(pathsLeft, possiblePathsRight)) {
 671                                                 matchingPaths.put(or, possiblePathsRight);
 672                                         }
 673                                 }
 674                                 if (matchingPaths.size() > 0) {
 675                                         if (matchingPaths.size() == 1) {
 676                                                 Resource or = matchingPaths.keySet().iterator().next();
 677
 678                                                 objectsLeft.add(ol);
 679                                                 objectsRight.add(or);
 680                                                 addComparable(ol, or);
 681                                                 Collection<Statement> statementsLeft = objectLeft.getValues(ol);
 682                                                 Collection<Statement> statementsRight = objectRight.getValues(or);
 683                                                 unreliableLeft.removeAll(statementsLeft);
 684                                                 unreliableRight.removeAll(statementsRight);
 685                                                 BijectionMap<Path,Path> map = getMatchingPaths(pathsLeft, matchingPaths.get(or));
 686                                                 for (Path left : map.getLeftSet()) {
 687                                                         Path right = map.getRight(left);
 688                                                         for (int i = 0; i < left.getLength(); i++) {
 689                                                                 addComparable(left.getStatements().get(i),right.getStatements().get(i));
 690                                                         }
 691                                                 }
 692                                         }
 693                                 }
 694                         }
 695
 696                 }
 697
 698         }
 699
 700         private boolean hasMatchingPaths(Set<Path> leftPaths, Set<Path> rightPaths) {
 701                 if (leftPaths.size() != rightPaths.size())
 702                         return false;
 703                 BijectionMap<Path,Path> map = getMatchingPaths(leftPaths, rightPaths);
 704                 return map.size() == leftPaths.size();
 705         }
 706
 707         private BijectionMap<Path,Path> getMatchingPaths(Set<Path> leftPaths, Set<Path> rightPaths) {
 708                 BijectionMap<Path,Path> map = new BijectionMap<Path, Path>();
 709                 for (Path leftPath : leftPaths) {
 710                         for (Path rightPath : rightPaths) {
 711                                 if (map.containsRight(rightPath))
 712                                         continue;
 713                                 if (leftPath.getLength() != rightPath.getLength())
 714                                         continue;
 715                                 if (comparableResources.contains(leftPath.getEnd(), rightPath.getEnd())) {
 716                                         map.map(leftPath, rightPath);
 717                                         break;
 718                                 }
 719                         }
 720                 }
 721                 return map;
 722         }
 723
 724         private void expand(Set<Path> paths) throws DatabaseException {
 725                 Set<Path> stepPathsLeft = new HashSet<Path>();
 726                 if (paths.size() == 0)
 727                         return;
 728                 int length = paths.iterator().next().getLength() + 1;
 729                 for (Path p : paths) {
 730                         for (Resource rel : traversed) {
 731                                 stepPathsLeft.addAll(Path.expand(p,g.getStatements(p.getEnd(), rel)));
 732                         }
 733                 }
 734                 paths.clear();
 735                 for (Path p : stepPathsLeft) {
 736                         if (p.getLength() == length)
 737                                 paths.add(p);
 738                 }
 739         }
 740
 741         private Collection<Path> findComparableRight(Path leftPath, Resource beginRight) throws DatabaseException {
 742                 Set<Path> rightPaths = new HashSet<Path>();
 743                 rightPaths.addAll(Path.create(g.getStatements(beginRight, getRight(leftPath.getStatements().get(0).getPredicate()))));
 744                 for (int i = 1; i < leftPath.getLength(); i++) {
 745                         if (rightPaths.size() == 0)
 746                                 return rightPaths;
 747                         Set<Path> stepPaths = new HashSet<Path>();
 748                         for (Path p : rightPaths) {
 749                                 stepPaths.addAll(Path.expand(p, g.getStatements(p.getEnd(), getRight(leftPath.getStatements().get(i).getPredicate()))));
 750                         }
 751                         rightPaths.clear();
 752                         for (Path p : stepPaths)
 753                                 if (p.getLength() == i+1)
 754                                         rightPaths.add(p);
 755                 }
 756                 return rightPaths;
 757
 758         }
 759
 760         private Resource getRight(Resource r) {
 761                 if (comparableResources.containsLeft(r))
 762                         return comparableResources.getRight(r);
 763                 return r;
 764         }
 765
 766
 767
 768         public BijectionMap<Statement, Statement> getComparableStatements() {
 769                 return comparableStatements;
 770         }
 771
 772         public BijectionMap<Resource, Resource> getComparableResources() {
 773                 return comparableResources;
 774         }
 775
 776         public GraphChanges getChanges() {
 777                 return new GraphChanges(r1,r2,changes1,changes2,modifications,comparableResources);
 778         }
 779
 780         private void addComparable(Statement left, Statement right) throws DatabaseException {
 781                 addComparable(left.getObject(), right.getObject());
 782                 comparableStatements.map(left, right);
 783                 //comparableResources.map(left.getObject(), right.getObject());
 784         }
 785
 786         private void addComparable(Resource left, Resource right) throws DatabaseException {
 787                 if(!comparableResources.contains(left, right)) {
 788                         if (comparableResources.containsLeft(left)||comparableResources.containsRight(right)) {
 789                                 throw new DatabaseException("Comparator error: Trying to map " + left + " to " + right + " while mappings " + left + " to " + comparableResources.getRight(left) + " and " + comparableResources.getLeft(right) + " to " + right + " exist.");
 790                         } else {
 791                                 if (DEBUG) System.out.println(left + " = " + right);
 792                                 if (left.getResourceId() == 610381L)
 793                                         System.out.println();
 794                                 comparableResources.map(left, right);
 795                         }
 796                 }
 797
 798         }
 799
 800         public List<Statement> filterAsserted(Resource r, Collection<Statement> in) throws DatabaseException {
 801                 List<Statement> out = new ArrayList<Statement>();
 802                 for (Statement s : in) {
 803                         if (!s.isAsserted(r))
 804                                 out.add(s);
 805
 806                 }
 807                 return out;
 808         }
 809
 810
 811
 812         private String printStatement(ReadGraph graph, Statement s) throws DatabaseException {
 813                 return NameUtils.getSafeName(graph, s.getSubject()) + " " + NameUtils.getSafeName(graph, s.getPredicate()) + " " + NameUtils.getSafeName(graph, s.getObject());
 814         }
 815
 816         private List<Statement> filterTraversed(List<Statement> in) throws DatabaseException {
 817                 return filter(traversed, in);
 818         }
 819
 820         private List<Statement> filterNonTested(List<Statement> in) throws DatabaseException {
 821                 return filter(nonTested, in);
 822         }
 823
 824         private List<Statement> filterNonTraversed(List<Statement> in) throws DatabaseException {
 825                 return filter(nonTraversed, in);
 826         }
 827
 828         private List<Statement> filter(Collection<Resource> toFilter, List<Statement> in) throws DatabaseException {
 829                 if (toFilter.size() == 0)
 830                         return in;
 831                 List<Statement> out = new ArrayList<Statement>();
 832                 for (Statement s : in) {
 833                         boolean usable = true;
 834                         for (Resource r : toFilter) {
 835                                 if (g.isSubrelationOf(s.getPredicate(),r)) {
 836                                         usable = false;
 837                                         break;
 838                                 }
 839                         }
 840                         if (usable) {
 841                                 out.add(s);
 842                         }
 843
 844                 }
 845                 return out;
 846         }
 847
 848
 849         private void addDeletion(Statement s) {
 850                 if (!changes1Set.contains(s)) {
 851                         changes1Set.add(s);
 852                         changes1.add(s);
 853                         if (s.getObject().getResourceId() == 532631L)
 854                                 System.out.println();
 855                 }
 856         }
 857
 858         private void addAddition(Statement s) {
 859                 if (!changes2Set.contains(s)) {
 860                         changes2Set.add(s);
 861                         changes2.add(s);
 862                 }
 863         }
 864
 865         private void addModification(Resource sub1, Statement s1, Resource sub2, Statement s2) {
 866                 Modification mod = new Modification(sub1, sub2, s1, s2);
 867                 if (!modificationsSet.contains(mod)) {
 868                         modificationsSet.add(mod);
 869                         modifications.add(mod);
 870                 }
 871         }
 872
 873         public void sortStatement(List<Statement> list1, List<Statement> list2) {
 874                 sortStatement(list1, list2, scomp);
 875         }
 876
 877         public void sortStatement(List<Statement> list1, List<Statement> list2, Comparator<Statement> scomp) {
 878                 Collections.sort(list1,scomp);
 879                 Collections.sort(list2,scomp);
 880
 881                 List<Statement> sorted1 = new ArrayList<Statement>(list1.size());
 882                 List<Statement> sorted2 = new ArrayList<Statement>(list2.size());
 883                 sorted1.addAll(list1);
 884                 sorted2.addAll(list2);
 885
 886                 int ss1 = 0;
 887                 int ss2 = 0;
 888                 for (int i = 0; i < list1.size(); ) {
 889                         Statement s1 = list1.get(i);
 890                         int same1 = sameRel(list1, i);
 891                         for (int j = 0; j < list2.size(); j++) {
 892                                 Statement s2 = list2.get(j);
 893                                 if (scomp.compare(s1, s2) == 0) {
 894                                         int same2 = sameRel(list2, j);
 895                                         copy(sorted1,ss1,list1,i,same1);
 896                                         ss1 += same1;
 897                                         copy(sorted2,ss2,list2,j,same2);
 898                                         ss2 += same2;
 899                                         break;
 900                                 }
 901                         }
 902                         i+= same1;
 903                 }
 904                 if (ss1 < sorted1.size()) {
 905                         for (Statement s : list1) {
 906                                 if (!sorted1.contains(s)) {
 907                                         sorted1.set(ss1,s);
 908                                         ss1++;
 909                                 }
 910                         }
 911                 }
 912                 if (ss2 < sorted2.size()) {
 913                         for (Statement s : list2) {
 914                                 if (!sorted2.contains(s)) {
 915                                         sorted2.set(ss2,s);
 916                                         ss2++;
 917                                 }
 918                         }
 919                 }
 920
 921                 list1.clear();
 922                 list2.clear();
 923                 list1.addAll(sorted1);
 924                 list2.addAll(sorted2);
 925         }
 926
 927         public <T> void copy(List<T> to, int toIndex, List<T> from, int fromIndex, int amount) {
 928                 for (int i = 0; i <  amount; i++) {
 929                         to.set(toIndex + i, from.get(fromIndex+ i));
 930                 }
 931         }
 932
 933         public void sortResource(List<Resource> list1, List<Resource> list2) {
 934                 Collections.sort(list1,rcomp);
 935                 int js = 0;
 936                 for (int i = 0; i < list1.size(); i++) {
 937                         Resource s1 = list1.get(i);
 938                         for (int j = js; j < list2.size(); j++) {
 939                                 Resource s2 = list2.get(j);
 940                                 if (rcomp.compare(s1, s2) == 0) {
 941                                         Resource t = list2.get(js);
 942                                         list2.set(js, s2);
 943                                         list2.set(j, t);
 944                                         break;
 945                                 }
 946                         }
 947                         js++;
 948                 }
 949         }
 950
 951         private void compareStatements(List<Statement> ss1, List<Statement> ss2, Stack<Resource> objectsLeft, Stack<Resource> objectsRight, Collection<Statement> unreliableLeft, Collection<Statement> unreliableRight) throws DatabaseException {
 952                 sortStatement(ss1, ss2);
 953
 954                 int i1 = 0;
 955                 int i2 = 0;
 956
 957                 while (true) {
 958                         if (i1 >= ss1.size()) {
 959                                 if (i2 >= ss2.size()) {
 960                                         break;
 961                                 } else {
 962                                         while (i2 < ss2.size()) {
 963                                                 if (DEBUG) System.out.println("Compare Statements addition " + printStatement(g,ss2.get(i2)));
 964
 965                                                 addAddition(ss2.get(i2));
 966                                                 i2++;
 967                                         }
 968                                         break;
 969                                 }
 970                         } else if (i2 >= ss2.size()) {
 971                                 while (i1 < ss1.size()) {
 972                                         if (DEBUG) System.out.println("Compare Statements deletion " + printStatement(g,ss1.get(i1)));
 973                                         addDeletion(ss1.get(i1));
 974                                         i1++;
 975                                 }
 976                                 break;
 977                         }
 978                         int same1 = sameRel(ss1, i1);
 979                         int same2 = sameRel(ss2, i2);
 980                         int c = rcomp.compare(ss1.get(i1).getPredicate(),ss2.get(i2).getPredicate());
 981                         if (c == 0) {
 982                                 compareStatements(ss1, i1, same1, ss2, i2, same2,objectsLeft,objectsRight,unreliableLeft,unreliableRight);
 983                                 i1+=same1;
 984                                 i2+=same2;
 985                         } else if (c < 0) {
 986                                 for (int i = 0; i < same1; i++) {
 987                                         if (DEBUG) System.out.println("Compare Statements deletion " + printStatement(g,ss1.get(i+i1)));
 988                                         addDeletion(ss1.get(i+i1));
 989                                 }
 990                                 i1 += same1;
 991                         } else {
 992                                 for (int i = 0; i < same2; i++) {
 993                                         if (DEBUG) System.out.println("Compare Statements addition " + printStatement(g,ss2.get(i+i2)));
 994                                         addAddition(ss2.get(i+i2));
 995                                 }
 996
 997                                 i2 += same2;
 998                         }
 999                 }
1000         }
1001
1002
1003
1004         private int sameRel(List<Statement> statements, int off) {
1005                 if (statements.size() <= off)
1006                         return 0;
1007                 int same = 1;
1008                 long id = statements.get(off).getPredicate().getResourceId();
1009                 for (int i = off+1; i <statements.size(); i++) {
1010                         if (statements.get(i).getPredicate().getResourceId() == id)
1011                                 same++;
1012                         else
1013                                 break;
1014                 }
1015                 return same;
1016
1017         }
1018
1019         private int compareObject(Resource o1, Resource o2) throws DatabaseException {
1020                 if (o1.equals(o2))
1021                         return -1;
1022                 if (comparableResources.contains(o1, o2))
1023                         return (-1);
1024                 if (comparableResources.containsLeft(o1))
1025                         return Integer.MAX_VALUE;
1026                 if (comparableResources.containsRight(o2))
1027                         return Integer.MAX_VALUE;
1028                 if (nonMatchedLeft.contains(o1))
1029                         return Integer.MAX_VALUE;
1030                 if (nonMatchedRight.contains(o2))
1031                         return Integer.MAX_VALUE;
1032                 return comparator.compare(g, o1, o2);
1033         }
1034
1035         private void compareStatements(List<Statement> ss1, int off1, int len1, List<Statement> ss2, int off2, int len2, Collection<Resource> objectsLeft, Collection<Resource> objectsRight, Collection<Statement> unreliableLeft, Collection<Statement> unreliableRight) throws DatabaseException {
1036                 boolean[] used1 = new boolean[len1];
1037                 for (int i = 0; i < used1.length; i++) {
1038                         used1[i] = false;
1039                 }
1040
1041                 boolean[] used2 = new boolean[len2];
1042                 for (int i = 0; i < used2.length; i++) {
1043                         used2[i] = false;
1044                 }
1045
1046                 // left, right, difference
1047                 List<List<Integer>> differences = new ArrayList<List<Integer>>();
1048                 for (int i1 = off1; i1 < off1 + len1; i1++) {
1049                         Statement s1 = ss1.get(i1);
1050                         List<Integer> diff = new ArrayList<Integer>();
1051                         for (int i2 = off2; i2 < off2 + len2; i2++) {
1052                                 Statement s2 = ss2.get(i2);
1053                                 int d = compareObject(s1.getObject(), s2.getObject());
1054                                 if (d == 0) {
1055                                         for (Resource t : strong) {
1056                                                  if (s1.getPredicate().equals(t) || g.isSubrelationOf(s1.getPredicate(), t)) {
1057                                                          d = 1;
1058                                                          break;
1059                                                  }
1060                                         }
1061                                 }
1062                                 diff.add(d);
1063                         }
1064                         differences.add(diff);
1065                 }
1066                 // difference, left
1067                 MapList<Integer, Integer> priorities = new MapList<Integer, Integer>();
1068                 for (int i = 0; i < differences.size(); i++) {
1069                         List<Integer> list = differences.get(i);
1070                         for (int j = 0; j < list.size(); j++) {
1071                                 priorities.add(list.get(j), i);
1072                         }
1073                 }
1074
1075                 Integer[] pris = priorities.getKeys(new Integer[]{});
1076                 Arrays.sort(pris);
1077
1078                 for (Integer pri : pris) {
1079                         if (pri == Integer.MAX_VALUE) {
1080
1081                         } else if (pri == 0) {
1082
1083                         } else {
1084                                 List<Integer> i1s = priorities.getValues(pri);
1085                                 for (Integer i1 : i1s) {
1086                                         if (used1[i1])
1087                                                 continue;
1088                                         List<Integer> i2diff = differences.get(i1);
1089                                         for (int i2 = 0; i2 < i2diff.size(); i2++) {
1090                                                 if (i2diff.get(i2) == pri) {
1091                                                         if (used2[i2])
1092                                                                 continue;
1093                                                         used1[i1] = true;
1094                                                         used2[i2] = true;
1095                                                         Statement s1  = ss1.get(i1+off1);
1096                                                         Statement s2  = ss2.get(i2+off2);
1097
1098                                                         if (objectsLeft != null) {
1099                                                                 objectsLeft.add(s1.getObject());
1100                                                                 objectsRight.add(s2.getObject());
1101                                                         }
1102                                                         addComparable(s1, s2);
1103                                                         break;
1104                                                 }
1105                                         }
1106                                 }
1107                         }
1108                 }
1109
1110                 for (Integer pri : pris) {
1111                         if (pri != 0)
1112                                 continue;
1113                         Set<Statement> s1s = new HashSet<Statement>();
1114                         Set<Statement> s2s = new HashSet<Statement>();
1115                         Set<Integer> s1i = new HashSet<Integer>();
1116                         Set<Integer> s2i = new HashSet<Integer>();
1117                         List<Integer> i1s = priorities.getValues(pri);
1118                         for (Integer i1 : i1s) {
1119                                 if (used1[i1])
1120                                         continue;
1121                                 List<Integer> i2diff = differences.get(i1);
1122                                 for (int i2 = 0; i2 < i2diff.size(); i2++) {
1123                                         if (i2diff.get(i2) == pri) {
1124                                                 if (used2[i2])
1125                                                         continue;
1126                                                 Statement s1  = ss1.get(i1+off1);
1127                                                 Statement s2  = ss2.get(i2+off2);
1128                                                 s1s.add(s1);
1129                                                 s2s.add(s2);
1130                                                 s1i.add(i1);
1131                                                 s2i.add(i2);
1132                                         }
1133                                 }
1134                         }
1135                         if (unreliableLeft != null) {
1136                                 unreliableLeft.addAll(s1s);
1137                                 unreliableRight.addAll(s2s);
1138                         }
1139                         for (Integer i : s1i)
1140                                 used1[i] = true;
1141                         for (Integer i : s2i)
1142                                 used2[i] = true;
1143
1144                 }
1145                 for (int i1 = off1; i1 < off1 + len1; i1++) {
1146                         if (!used1[i1-off1]) {
1147                                 if (DEBUG) System.out.println("Compare Object deletion " + printStatement(g,ss1.get(i1)));
1148                                 addDeletion(ss1.get(i1));
1149                         }
1150                 }
1151                 for (int i2 = off2; i2 < off2 + len2; i2++) {
1152                         if (!used2[i2-off2]) {
1153                                 if (DEBUG) System.out.println("Compare Object addition " + printStatement(g,ss2.get(i2)));
1154                                 addAddition(ss2.get(i2));
1155                         }
1156                 }
1157         }
1158
1159
1160
1161         /**
1162          * compares properties, assumes functional relations
1163          * @param r1
1164          * @param r2
1165          * @throws ServiceException
1166          * @throws DoesNotContainValueException
1167          * @throws ValidationException
1168          */
1169         private void compareProps(Resource r1, Resource r2) throws DatabaseException {
1170                 if (DEBUG) System.out.println("compareProps " + r1 + " " + NameUtils.getSafeName(g, r1) + " " + r2 + " " + NameUtils.getSafeName(g, r2));
1171                 List<Statement> ss1 = new ArrayList<Statement>();
1172                 List<Statement> ss2 = new ArrayList<Statement>();
1173                 ss1.addAll(g.getStatements(r1, b.HasProperty));
1174                 ss2.addAll(g.getStatements(r2, b.HasProperty));
1175                 ss1 = filterNonTested(ss1);
1176                 ss2 = filterNonTested(ss2);
1177                 sortStatement(ss1, ss2);
1178
1179                 int i1 = 0;
1180                 int i2 = 0;
1181
1182                 while (true) {
1183                         if (i1 >= ss1.size()) {
1184                                 if (i2 >= ss2.size())
1185                                         break;
1186                                 else {
1187                                         while (i2 < ss2.size()) {
1188                                                 if (DEBUG) System.out.println("Compare Prop diff2 " + printStatement(g,ss2.get(i2)));
1189                                                 addAddition(ss2.get(i2));
1190                                                 i2++;
1191                                         }
1192                                         break;
1193                                 }
1194                         } else if (i2 >= ss2.size()) {
1195                                 while (i1 < ss1.size()) {
1196                                         if (DEBUG) System.out.println("Compare Prop diff1 " + printStatement(g,ss1.get(i1)));
1197                                         addDeletion(ss1.get(i1));
1198                                         i1++;
1199                                 }
1200                                 break;
1201                         }
1202                         Statement s1 = ss1.get(i1);
1203                         Statement s2 = ss2.get(i2);
1204                         if (s1.isAsserted(r1) && s2.isAsserted(r2)) {
1205                                 i1++;
1206                                 i2++;
1207                                 continue;
1208                         }
1209                         int c = scomp.compare(s1, s2);
1210                         switch (c) {
1211                                 case 0:{
1212                                         boolean b1 = g.hasValue(s1.getObject());
1213                                         boolean b2 = g.hasValue(s2.getObject());
1214                                         if (b1 == b2) {
1215                                                 if (b1) {
1216 //                                                      Object v1 = g.getValue(s1.getObject());
1217 //                                                      Object v2 = g.getValue(s2.getObject());
1218 //                                                      boolean eq = compareValue(v1, v2);
1219                                                         boolean eq = compareValue(g,b,s1.getObject(), s2.getObject());
1220                                                         if (!eq) {
1221                                                                 addModification(r1,s1,r2,s2);
1222                                                                 if (!s1.isAsserted(r1) && !s2.isAsserted(r2))
1223                                                                         addComparable(s1, s2);
1224                                                         }
1225                                                 } else {
1226                                                         if (!s1.getObject().equals(s1.getSubject()) && !s2.getObject().equals(s2.getSubject()))
1227                                                                 compareProps(s1.getObject(), s2.getObject());
1228                                                 }
1229                                         } else {
1230                                                 addModification(r1,s1,r2,s2);
1231                                                 if (!s1.isAsserted(r1) && !s2.isAsserted(r2))
1232                                                         addComparable(s1, s2);
1233                                         }
1234                                         i1++;
1235                                         i2++;
1236                                         break;
1237                                 }
1238                                 case -1:{
1239                                         if (DEBUG) System.out.println("Compare Prop diff1s " + printStatement(g,s1));
1240                                         addDeletion(s1);
1241                                         i1++;
1242                                         break;
1243                                 }
1244
1245                                 case 1:{
1246                                         if (DEBUG) System.out.println("Compare Prop diff2s " + printStatement(g,s2));
1247                                         addAddition(s2);
1248                                         i2++;
1249                                         break;
1250                                 }
1251                         }
1252
1253                 }
1254
1255                 ss1.clear();
1256                 ss2.clear();
1257
1258         }
1259
1260         public static boolean compareValue(ReadGraph g, Layer0 b, Resource r1, Resource r2) throws DatabaseException {
1261                 Resource t1 = g.getSingleType(r1);
1262                 Resource t2 = g.getSingleType(r2);
1263                 if (!t1.equals(t2))
1264                         return false;
1265                 if (t1.equals(b.Integer)) {
1266                         int v1 = g.getValue(r1, Bindings.INTEGER);
1267                         int v2 = g.getValue(r2, Bindings.INTEGER);
1268                         return v1 == v2;
1269                 } else if (t1.equals(b.Float)) {
1270                         float v1 = g.getValue(r1, Bindings.FLOAT);
1271                         float v2 = g.getValue(r2, Bindings.FLOAT);
1272                         return v1 == v2;
1273                 } else if (t1.equals(b.Double)) {
1274                         double v1 = g.getValue(r1, Bindings.DOUBLE);
1275                         double v2 = g.getValue(r2, Bindings.DOUBLE);
1276                         return v1 == v2;
1277                 } else if (t1.equals(b.String)) {
1278                         String v1 = g.getValue(r1, Bindings.STRING);
1279                         String v2 = g.getValue(r2, Bindings.STRING);
1280                         return v1.equals(v2);
1281                 } else if (t1.equals(b.Boolean)) {
1282                         boolean v1 = g.getValue(r1, Bindings.BOOLEAN);
1283                         boolean v2 = g.getValue(r2, Bindings.BOOLEAN);
1284                         return v1 == v2;
1285                 } else if (t1.equals(b.Byte)) {
1286                         byte v1 = g.getValue(r1, Bindings.BYTE);
1287                         byte v2 = g.getValue(r2, Bindings.BYTE);
1288                         return v1 == v2;
1289                 } else if (t1.equals(b.Long)) {
1290                         long v1 = g.getValue(r1, Bindings.LONG);
1291                         long v2 = g.getValue(r2, Bindings.LONG);
1292                         return v1 == v2;
1293                 } else if (t1.equals(b.IntegerArray)) {
1294                         int[] v1 = g.getValue(r1, Bindings.INT_ARRAY);
1295                         int[] v2 = g.getValue(r2, Bindings.INT_ARRAY);
1296                         return Arrays.equals(v1,v2);
1297                 } else if (t1.equals(b.FloatArray)) {
1298                         float[] v1 = g.getValue(r1, Bindings.FLOAT_ARRAY);
1299                         float[] v2 = g.getValue(r2, Bindings.FLOAT_ARRAY);
1300                         return Arrays.equals(v1,v2);
1301                 } else if (t1.equals(b.DoubleArray)) {
1302                         double[] v1 = g.getValue(r1, Bindings.DOUBLE_ARRAY);
1303                         double[] v2 = g.getValue(r2, Bindings.DOUBLE_ARRAY);
1304                         return Arrays.equals(v1,v2);
1305                 } else if (t1.equals(b.StringArray)) {
1306                         String[] v1 = g.getValue(r1, Bindings.STRING_ARRAY);
1307                         String[] v2 = g.getValue(r2, Bindings.STRING_ARRAY);
1308                         return Arrays.equals(v1,v2);
1309                 } else if (t1.equals(b.BooleanArray)) {
1310                         boolean[] v1 = g.getValue(r1, Bindings.BOOLEAN_ARRAY);
1311                         boolean[] v2 = g.getValue(r2, Bindings.BOOLEAN_ARRAY);
1312                         return Arrays.equals(v1,v2);
1313                 } else if (t1.equals(b.ByteArray)) {
1314                         byte[] v1 = g.getValue(r1, Bindings.BYTE_ARRAY);
1315                         byte[] v2 = g.getValue(r2, Bindings.BYTE_ARRAY);
1316                         return Arrays.equals(v1,v2);
1317                 } else if (t1.equals(b.LongArray)) {
1318                         long[] v1 = g.getValue(r1, Bindings.LONG_ARRAY);
1319                         long[] v2 = g.getValue(r2, Bindings.LONG_ARRAY);
1320                         return Arrays.equals(v1,v2);
1321                 } else {
1322                         Object v1 = g.getValue(r1);
1323                         Object v2 = g.getValue(r2);
1324                         return compareValue(v1, v2);
1325                 }
1326
1327         }
1328
1329         public static boolean compareValue(Object v1, Object v2) {
1330                 if (v1 instanceof Object[] && v2 instanceof Object[])
1331                         return Arrays.deepEquals((Object[])v1, (Object[])v2);
1332                 else if (v1 instanceof int[] && v2 instanceof int[])
1333                         return Arrays.equals((int[])v1, (int[])v2);
1334                 else if (v1 instanceof float[] && v2 instanceof float[])
1335                         return Arrays.equals((float[])v1, (float[])v2);
1336                 else if (v1 instanceof double[] && v2 instanceof double[])
1337                         return Arrays.equals((double[])v1, (double[])v2);
1338                 else if (v1 instanceof long[] && v2 instanceof long[])
1339                         return  Arrays.equals((long[])v1, (long[])v2);
1340                 else if (v1 instanceof byte[] && v2 instanceof byte[])
1341                         return Arrays.equals((byte[])v1, (byte[])v2);
1342                 else if (v1 instanceof boolean[] && v2 instanceof boolean[])
1343                         return Arrays.equals((boolean[])v1, (boolean[])v2);
1344                 else
1345                         return v1.equals(v2);
1346         }
1347
1348
1349         public class PredicateComparator implements Comparator<Statement> {
1350                 @Override
1351                 public int compare(Statement o1, Statement o2) {
1352                         if (comparableResources.contains(o1.getPredicate(), o2.getPredicate()))
1353                                 return 0;
1354                         if (o1.getPredicate().getResourceId() < o2.getPredicate().getResourceId())
1355                                 return -1;
1356                         if (o1.getPredicate().getResourceId() > o2.getPredicate().getResourceId())
1357                                 return 1;
1358                         return 0;
1359                 }
1360         }
1361
1362         public class SubjectComparator implements Comparator<Statement> {
1363                 @Override
1364                 public int compare(Statement o1, Statement o2) {
1365                         if (comparableResources.contains(o1.getSubject(), o2.getSubject()))
1366                                 return 0;
1367                         if (o1.getSubject().getResourceId() < o2.getSubject().getResourceId())
1368                                 return -1;
1369                         if (o1.getSubject().getResourceId() > o2.getSubject().getResourceId())
1370                                 return 1;
1371                         return 0;
1372                 }
1373         }
1374
1375         public class ObjectComparator implements Comparator<Statement> {
1376                 @Override
1377                 public int compare(Statement o1, Statement o2) {
1378                         if (comparableResources.contains(o1.getObject(), o2.getObject()))
1379                                 return 0;
1380                         if (o1.getObject().getResourceId() < o2.getObject().getResourceId())
1381                                 return -1;
1382                         if (o1.getObject().getResourceId() > o2.getObject().getResourceId())
1383                                 return 1;
1384                         return 0;
1385                 }
1386         }
1387
1388         public static class FullStatementComparator implements Comparator<Statement> {
1389                 @Override
1390                 public int compare(Statement o1, Statement o2) {
1391                         if (o1.getSubject().getResourceId() < o2.getSubject().getResourceId())
1392                                 return -1;
1393                         if (o1.getSubject().getResourceId() > o2.getSubject().getResourceId())
1394                                 return 1;
1395                         if (o1.getPredicate().getResourceId() < o2.getPredicate().getResourceId())
1396                                 return -1;
1397                         if (o1.getPredicate().getResourceId() > o2.getPredicate().getResourceId())
1398                                 return 1;
1399                         if (o1.getObject().getResourceId() < o2.getObject().getResourceId())
1400                                 return -1;
1401                         if (o1.getObject().getResourceId() > o2.getObject().getResourceId())
1402                                 return 1;
1403                         return 0;
1404                 }
1405         }
1406
1407         public class ResComparator implements Comparator<Resource> {
1408                 @Override
1409                 public int compare(Resource o1, Resource o2) {
1410                         if (comparableResources.contains(o1, o2))
1411                                 return 0;
1412                         if (o1.getResourceId() < o2.getResourceId())
1413                                 return -1;
1414                         if (o1.getResourceId() > o2.getResourceId())
1415                                 return 1;
1416                         return 0;
1417                 }
1418         }
1419
1420 }